RESEARCH PAPER
Sequence-based species delimitation in the Balkan Bythinella Moquin-Tandon, 1856 (Gastropoda: Rissooidea) with general mixed Yule coalescent model
 
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Department of Malacology, Institute of Zoology, Jagiellonian University, Cracow, Poland
 
 
Submission date: 2012-01-02
 
 
Final revision date: 2012-03-26
 
 
Acceptance date: 2012-04-24
 
 
Publication date: 2020-04-08
 
 
Folia Malacol. 2012;20(2):111-120
 
KEYWORDS
ABSTRACT
Three sets of sequences of cytochrome oxidase subunit I (COI) from a spring snail Bythinella representing all the Balkans (63 sequences), Greece (78 sequences), and Romania (136 sequences), were used to infer maximum likelihood ultrametric trees. The trees were used to run General Mixed Yule Coalescent (GMYC) analyses assuming single threshold and multiple threshold models. For the single threshold model the threshold value was identical (0.00248 substitution per site) for each data set; for the multiple one the threshold value varied widely for the Balkan tree. Despite the same threshold value, the distinctness of the same lineages varied among trees, mostly due to differences in the models of substitution inferred for each set of sequences, but also due to different proportions of singletons in the data sets. The inferred numbers of ML entities, theoretically equalling the numbers of species, compared with all the biological evidence available so far, were overestimated in Romanian and Greek trees, but realistic in the tree for all the Balkans.
 
REFERENCES (57)
1.
Adolfsson S., Michalakis Y., Paczesniak D., Bode S. N. S., Butlin R. K. 2010. Evaluation of elevated ploidy and asexual reproduction as alternative explanations for geographic parthenogenesis in Eucypris virens ostracods. Evolution 64: 986-997. https://doi.org/10.1111/j.1558....
 
2.
Ahrens D., Monaghan M. T., Vogler A. P. 2007. DNA-based taxonomy for associating adults and larvae in multi-species assemblages of chafers (Coleoptera: Scarabaeidae). Mol. Phyl. Evol. 44: 436-449. https://doi.org/10.1016/j.ympe....
 
3.
Akaike H. 1974. A new look at the statistical model identification. IEEE Trans. Automat. Control 19: 716-723. https://doi.org/10.1109/TAC.19....
 
4.
Barraclough T. G., Hughes M., Ashford-Hodges N., Fujisawa T. 2009. Inferring evolutionarily significant units of bacterial diversity from broad environmental surveys of single-locus data. Biol. Lett. 5: 425-428. https://doi.org/10.1098/rsbl.2....
 
5.
Benke M., Brändle M., Albrecht C., Wilke T. 2009. Pleistocene phylogeography and phylogenetic concordance in cold-adapted spring snails (Bythinella spp.). Mol. Ecol. 18: 890-903. https://doi.org/10.1111/j.1365....
 
6.
Bichain J.-M., Gaubert P., Samadi S., Boisselier-Dubayle M.-C. 2007a. A gleam in the dark: Phylogenetic species delimitation in the confusing spring-snail genus Bythinella Moquin-Tandon, 1856 (Gastropoda: Rissooidea: Amnicolidae). Mol. Phyl. Evol. 45: 927-941. https://doi.org/10.1016/j.ympe....
 
7.
Bichain J.-M., Boisselier-Dubayle M.-C., Bouchet P., Samadi S. 2007b. Species delimitation in the genus Bythinella (Mollusca: Caenogastropoda: Rissooidea): a first attempt combining molecular and morphometrical data. Malacologia 49: 293-311. https://doi.org/10.4002/0076-2....
 
8.
Bode S. N. S., Adolfsson S., Lamatsch D. K., Martins M. J. F., Schmit O., Vandekerkhove J., Mezquita F., Namiotko T., Rossetti G., Schön I., Butlin R. K., Martens K. 2010. Exceptional cryptic diversity and multiple origins of parthenogenesis in a freshwater ostracod. Mol. Phyl. Evol. 54: 542-552. https://doi.org/10.1016/j.ympe....
 
9.
Boeters H. D. 1973. Die Gattung Bythinella and Gattung Marstoniopsis in Westeuropa, 1. Westeuropäische Hydrobiidae, 4 (Prosobranchia). Proc. Fourth Europ. Malac. Congr., Malacologia 14: 271-285.
 
10.
Brandao S. N., Sauer J., Schon I. 2010. Circumantarctic distribution in Southern Ocean benthos? A genetic test using the genus Macroscapha (Crustacea, Ostracoda) as a model. Mol. Phyl. Evol. 55: 1055-1069. https://doi.org/10.1016/j.ympe....
 
11.
Cicconardi F., Nardi F., Emerson B. C., Frati F., Fanciulli P. P. 2010. Deep phylogeographic divisions and long-term persistence of forest invertebrates (Hexapoda: Collembola) in the North-Western Mediterranean basin. Mol. Ecol. 19: 386-400. https://doi.org/10.1111/j.1365....
 
12.
Crawford A. J., Lips K. R., Bermingham E. 2010. Epidemic disease decimates amphibian abundance, species diversity, and evolutionary history in the highlands of central Panama. Proc. Natl. Acad. Sci. USA 107: 13777-13782. https://doi.org/10.1073/pnas.0....
 
13.
Falniowski A. 1987. Hydrobioidea of Poland (Prosobranchia: Gastropoda). Folia Malacol. 1: 1-122. https://doi.org/10.12657/folma....
 
14.
Falniowski A. 1992. Genus Bythinella Moquin-Tandon, 1855, in Poland (Gastropoda, Prosobranchia, Hydrobiidae. Paper presented at: IMC 1986. Proceedings of the 9th International Malacological Congress; Edinburgh, UK.
 
15.
Falniowski A., Horsak M., Szarowska M. 2009a. Bythinella hansboetersi Glöer et Pešić, 2006 (Gastropoda: Rissooidea) in Bulgaria: its morphology, molecular distinctness, and phylogeography. Folia Malacol. 17: 11-22. https://doi.org/10.2478/v10125....
 
16.
Falniowski A., Szarowska M. 2011. Radiation and phylogeography in a spring snail Bythinella (Mollusca: Gastropoda: Rissooidea) in continental Greece. Ann. Zool. Fenn. 48: 67-90. https://doi.org/10.5735/086.04....
 
17.
Falniowski A., Szarowska M., Glöer P., Pešić V., Georgiev D., Horsák M., Sirbu I. 2012. Radiation in Bythinella (Mollusca: Gastropoda: Rissooidea) in the Balkans. Folia Malacol. 20: 1-10. https://doi.org/10.2478/v10125....
 
18.
Falniowski A., Szarowska M., Sirbu I. 2009b. Bythinella Moquin-Tandon, 1856 (Gastropoda: Rissooidea: Bythinellidae) in Romania: species richness in a glacial refugium. J. Nat. Hist. 43: 2955-2973. https://doi.org/10.1080/002229....
 
19.
Falniowski A., Szarowska M., Sirbu I. 2009c. Bythinella Moquin-Tandon, 1856 (Gastropoda: Rissooidea: Bythinellidae) in Romania: its morphology with description of four new species. Folia Malacol. 17: 21-36. https://doi.org/10.2478/v10125....
 
20.
Fontaneto D., Herniou E., Boschetti C., Caprioli M., Melone G., Ricci C., Barraclough T. G. 2007. Independently evolving species in asexual bdelloid rotifers. PLoS Biology 5: e87. https://doi.org/10.1371/journa....
 
21.
Fontaneto D., Kaya M., Herniou E. A., Barraclough T. G. 2009. Extreme levels of hidden diversity in microscopic animals (Rotifera) revealed by DNA taxonomy. Mol. Phyl. Evol. 53: 182-189. https://doi.org/10.1016/j.ympe....
 
22.
Gattolliat J. L., Monaghan M. T. 2010. DNA-based association of adults and larvae in Baetidae (Ephemeroptera) with the description of a new genus Adnoptilum in Madagascar. J. N. Am. Benthol. Soc. 29: 1042-1057. https://doi.org/10.1899/09-119....
 
23.
Giusti F., Pezzoli E. 1977. Primo contributo alla revisione del genere Bythinella in Italia. Natura Bresciana, Annurario del Museo Civico di Storia Naturale di Brescia 14: 3-80.
 
24.
Giusti F., Pezzoli E. 1980. Gasteropodi, 2 (Gastropoda: Prosobranchia: Hydrobioidea, Pyrguloidea). Consiglio Nazionale delle Ricerche AQ/1/47. Guide per il riconoscimento delle specie animali delle acque interne Italiane, 8, Verona.
 
25.
Haase M., Wilke T., Mildner P. 2007. Identifying species of Bythinella (Caenogastropoda: Rissooidea): A plea for an integrative approach. Zootaxa 1563: 1-16. https://doi.org/10.11646/zoota....
 
26.
Hendrich L., Pons J., Ribera I., Balke M. 2010. Mitochondrial Cox1 sequence data reliably uncover patterns of insect diversity but suffer from high lineage-idiosyncratic error rates. PLoS ONE 5(12): e14448. https://doi.org/10.1371/journa....
 
27.
Jousselin E., Desdevises Y., d'Acier A. C. 2009. Fine-scale cospeciation between Brachycaudus and Buchnera aphidicola: bacterial genome helps define species and evolutionary relationships in aphids. Proc. R. Soc. Lond. B 276: 187-196. https://doi.org/10.1098/rspb.2....
 
28.
Jungbluth J. H., Boeters H. D. 1977. Zur Artabgrenzung bei Bythinella dunkeri und bavarica (Prosobranchia). Malacologia 16: 143-147.
 
29.
Leliaert F., Verbruggen H., Wysor B., De Clerck O. 2009. DNA taxonomy in morphologically plastic taxa: algorithmic species delimitation in the Boodlea complex (Chlorophyta: Cladophorales). Mol. Phyl. Evol. 53: 122-133. https://doi.org/10.1016/j.ympe....
 
30.
Lim G. S., Balke M., Meier R. 2012. Determining species boundaries in a world full of rarity: singletons, species delimitation methods. Syst. Biol. 60: 1-5. https://doi.org/10.1093/sysbio....
 
31.
Lohse K. 2009. Can mtDNA barcodes be used to delimit species? A response to Pons et al. (2006). Syst. Biol. 58: 439-442. https://doi.org/10.1093/sysbio....
 
32.
Lorion J., Buge B., Cruaud C., Samadi S. 2010. New insights into diversity and evolution of deep-sea Mytilidae (Mollusca: Bivalvia). Mol. Phyl. Evol. 57: 71-83. https://doi.org/10.1016/j.ympe....
 
33.
Monaghan M. T., Wild R., Elliot M., Fujisawa T., Balke M., Inward D. J., Lees D.C., Ranaivosolo R., Eggleton P., Barraclough T. G., Vogler A. P. 2009. Accelerated species inventory on Madagascar using coalescent- -based models of species delineation. Syst. Biol. 58: 298-311. https://doi.org/10.1093/sysbio....
 
34.
Nei M., Kumar S. 2000. Molecular evolution and phylogenetics. Oxford University Press, Oxford.
 
35.
Nekola J. C., Coles B. F., Bergthorsson U. 2009. Evolutionary pattern and process within the Vertigo gouldii (Mollusca: Pulmonata, Pupillidae) group of minute North American land snails. Mol. Phyl. Evol. 53: 1010-1024. https://doi.org/10.1016/j.ympe....
 
36.
Pages M., Chaval Y., Herbreteau V., Waengsothorn S., Cosson J. F. 2010. Revisiting the taxonomy of the Rattini tribe: a phylogeny-based delimitation of species boundaries. BMC Evol. Biol. 10: 184. https://doi.org/10.1186/1471-2....
 
37.
Papadopoulou A., Anastasiou I., Keskin B., Vogler A. P. 2009a. Comparative phylogeography of tenebrionid beetles in the Aegean archipelago: the effect of dispersal ability and habitat preference. Mol. Ecol. 18: 2503-2517. https://doi.org/10.1111/j.1365....
 
38.
Papadopoulou A., Jones A. G., Hammond P. M., Vogler A. P. 2009b. DNA taxonomy and phylogeography of beetles of the Falkland Islands (Islas Malvinas). Mol. Phyl. Evol. 53: 935-947. https://doi.org/10.1016/j.ympe....
 
39.
Papadopoulou A., Monaghan M. T., Barraclough T. G., Vogler A. P. 2009c. Sampling error does not invalidate the Yule-coalescent model for species delimitation. A response to Lohse (2009). Syst. Biol. 58: 442-444. https://doi.org/10.1093/sysbio....
 
40.
Paradis E. 2006. Analyses of phylogenetics and evolution with R. Springer, New York. https://doi.org/10.1007/978-0-....
 
41.
Paradis E., Claude J., Strimmer K. 2004. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20: 289-290. https://doi.org/10.1093/bioinf....
 
42.
Pons J., Barraclough T. G., Gomez-Zurita J., Cardoso A., Duran D. P., Hazell S., Kamoun S., Sumlin W. D., Vogler A. P. 2006. Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Syst. Biol. 55: 595-609. https://doi.org/10.1080/106351....
 
43.
Posada D. 2003. Selecting models of evolution. In: Salemi M., Vandamme A.-M. (eds). The phylogenetic handbook. A practical approach to DNA and protein phylogeny. Cambridge University Press, Cambridge, pp. 256-282.
 
44.
Posada D., Buckley T. R. 2004. Model selection and model averaging in phylogenetics: advantages of Akaike Information Criterion and Bayesian approaches over Likelihood Ratio Tests. Syst. Biol. 53: 793-808. https://doi.org/10.1080/106351....
 
45.
Posada D., Crandall K. A. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818. https://doi.org/10.1093/bioinf....
 
46.
Powell J. R., Monaghan M. T., Opik M., Rillig M. C. 2011. Evolutionary criteria outperform operational approaches in producing ecologically relevant fungal species inventories. Mol. Ecol. 20: 655-666. https://doi.org/10.1111/j.1365....
 
47.
R Development Core Team 2008. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.
 
48.
Radoman P. 1976. Speciation within the family Bythinellidae on the Balkans and Asia Minor. Zeitschr. Zool. Syst. Evolutionsforsch. 14: 130-152. https://doi.org/10.1111/j.1439....
 
49.
Radoman P. 1983. Hydrobioidea a superfamily of Prosobranchia (Gastropoda). I. Systematics. Serbian Academy of Sciences and Arts, Monographs 547, Department of Sciences 57: 1-256.
 
50.
Sober E. 2002. Instrumentalism, parsimony, and the Akaike framework. Phil. Sci. 69: 112-123. https://doi.org/10.1086/341839.
 
51.
Swofford D. L. 2002. PAUP* - Phylogenetic Analysis Using Parsimony (* and other methods). Ver. 4. [Computer software and manual], Sinauer Associates Inc. Publishers, Sunderland.
 
52.
Swofford D. L., Olsen G. J., Waddell P. J., Hillis D. M. 1996. Phylogenetic inference. In: Hillis D. M., Moritz C., Mable B. K. (eds). Molecular systematics. 2 ed, Sinauer Associates Inc., Sunderland, pp. 407-514.
 
53.
Vuataz L., Sartori M., Wagner A., Monaghan M. T. 2011. Toward a DNA taxonomy of alpine Rhithrogena (Ephemeroptera: Heptageniidae) using a mixed Yule-coalescent analysis of mitochondrial and nuclear DNA. PLoS ONE 6(5): e19728. https://doi.org/10.1371/journa....
 
54.
Wilke T. 2003. Salenthydrobia gen. nov. (Rissooidea: Hydrobiidae): a potential relict of the Messinian salinity crisis. Zool. J. Linn. Soc. 137: 319-336. https://doi.org/10.1046/j.1096....
 
55.
Yassin A., Amedegnato C., Cruaud C., Veuille M. 2009. Molecular taxonomy and species delimitation in Andean Schistocerca (Orthoptera: Acrididae). Mol. Phyl. Evol. 53: 404-411. https://doi.org/10.1016/j.ympe....
 
56.
Yule G. U. 1924. A mathematical theory of evolution based on the conclusions of Dr. J. C. Willis, FRS. Phil. Trans. R. Soc. B 213: 21-87. https://doi.org/10.1098/rstb.1....
 
57.
Zaldivar-Rivero A., Martinez J. J., Ceccarelli F. S., De Jesú's-Bonilla V. S., Rodríguez-Pérez A. C., Reséndiz- Flores A., Smith A. 2010. DNA barcoding a highly diverse group of parasitoid wasps (Braconidae: Doryctinae) from a Mexican nature reserve. Mitochondrial DNA 21: 18-23. https://doi.org/10.3109/194017....
 
 
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